VarID	Parent	#alleles	End genes	Genes
0	-1	2	<Rv0021c — >NLCEDGFK_00033	whiB5, Rv0023
1	-1	2	<acpA — <DICKHMJL_00036	bioF2, LOCOBLCN_00038
2	-1	5	<glyA2 — <Rv0078B	Rv0071, Rv0072, Rv0073, Rv0074, Rv0075, Rv0076c, Rv0077c, Rv0078, Rv0078A, KHJFADPN_00083, LHDPFGCD_00084
3	2	3	>Rv0071 — >Rv0072	KHJFADPN_00083, LHDPFGCD_00084
4	-1	2	>gca — >hddA	DDHKONGI_00128, CGLLKJDI_00125
5	-1	2	>Rv0123 — >pepA	PE_PGRS2
6	-1	3	<Rv0150c — <ptbB	PE1, PE2, JDNMFAPF_00166, DICKHMJL_00165
7	-1	2	>Rv0185 — >GNJNDBPC_00203	bglS, mymT, KIOFIBPM_00199
8	-1	2	>lipC — <Rv0224c	Rv0221, echA1, Rv0223c, KIOFIBPM_00235
9	-1	2	>eccE3 — >HLEAIKOB_00319	JDNMFAPF_00313
10	-1	2	<Rv0309 — >PPE5	DIIMFKHA_00329, Rv0307c, LOCOBLCN_00332
11	-1	2	>Rv0328 — >Rv0331	Rv0329c, Rv0330c, MMOAJHON_00350
12	-1	2	<Rv0367c — <Rv0370c	JDNMFAPF_00390, JDNMFAPF_00391
13	-1	2	>Rv0386 — >purT	LGMPIKFB_00412
14	-1	2	<Rv0394c — >JDNMFAPF_00419	Rv0395, LOCOBLCN_00423
15	-1	2	<mmpL1 — >fadD30	mmpS1, ONFEBPAO_00427
16	-1	2	>fadD30 — <Rv0406c	pks6, BGIKMPLF_00427
17	-1	2	>fadB2 — <Rv0470A	umaA, pcaA, DIIMFKHA_00499
18	-1	2	>lprQ — >Rv0485	Rv0484c, HLEAIKOB_00507
19	-1	3	>mshA — >JDNMFAPF_00514	Rv0487, LHDPFGCD_00522, DICKHMJL_00510
20	-1	4	<Rv0504c — <serB1	KKEIJHOF_00535
21	-1	2	>Rv0567 — >nrdZ	cyp135B1, Rv0569, ALGELJCM_00599
22	-1	4	>nrdZ — <NEHIPPBO_00614	PAJLMBCP_00606, Rv0571c, JDNMFAPF_00603, Rv0572c, JDNMFAPF_00605, pncB2, Rv0574c, Rv0575c, Rv0576, TB27.3
23	22	2	<Rv0575c — >TB27.3	Rv0576
24	-1	2	>mce2D — >mce2F	lprL
25	-1	2	>Rv0648 — >rplJ	fabD2, Rv0650, BENKGBHG_00687
26	-1	2	>Rv0743c — <JDNMFAPF_00779	Rv0738, NLCEDGFK_00782, JDNMFAPF_00782, JDNMFAPF_00783, Rv0742, MJJKHKCB_00781
27	-1	2	>Rv0756c — >PPE12	JDNMFAPF_00799
28	-1	2	<Rv0823c — <Rv0825c	desA1, JHBILHKB_00874
29	-1	2	>lpqR — >Rv0843	Rv0839, pip, Rv0841, JDNMFAPF_00893, FDEGEOMF_00896
30	-1	3	<lpqR — >PE_PGRS14	KFIAJLAO_00885, JDNMFAPF_00887, NLCEDGFK_00892, Rv0837c
31	-1	2	<Rv0890c — >JDNMFAPF_00943	Rv0891c
32	-1	2	<Rv0943c — >Rv0944	HLEAIKOB_01000, HLEAIKOB_01001, HLEAIKOB_01002
33	-1	3	>vapC9 — <lprP	Rv0961, IKIEJDED_01019
34	-1	2	>Rv0968 — >ctpV	GNACELED_01023, GNACELED_01024
35	-1	6	>fadD14 — >Rv1088a	Rv1059, Rv1060, Rv1061, JDNMFAPF_01125, Rv1063c, lpqV, Rv1065, Rv1066, PE_PGRS19, PE_PGRS20, JDNMFAPF_01132, Rv1069c, echA8, echA9, Rv1072, JDNMFAPF_01137, fadA3, JDNMFAPF_01139, JDNMFAPF_01140, cbs, Rv1078, metB, greA, Rv1081c, mca, Rv1083, Rv1084, Rv1085c, Rv1086, PE_PGRS21, JDNMFAPF_01152, HPNGCBKO_01176
36	35	2	<echA9 — >JDNMFAPF_01137	Rv1072
37	-1	2	>coaA — <JDNMFAPF_01154	PE_PGRS22, HDNACMPC_01157
38	-1	2	>Rv1188 — >Rv1190	LGMPIKFB_01268
39	-1	2	>fadD6 — >folP2	JDNMFAPF_01279
40	-1	2	>Rv1250 — <lprE	IFJGPHMJ_01324, PBBKIKIG_01334
41	-1	3	>Rv1264 — <embR	Rv1265, pknH, FHCBBFLD_01339, FHCBBFLD_01340
42	-1	2	<Rv1268c — <Rv1271c	NLCEDGFK_01354, lprA
43	-1	2	>thrC — >thrB	PCEFCEAK_01963
44	-1	6	<Rv1318c — <Rv1320c	Rv1319c, MLMBNMCN_01403, LEGLLPEO_01413, ADOPOEMM_01404, EADOGLGB_01408, OPNNEIGF_01413, ADOPOEMM_01401
45	-1	3	>Rv1332 — >Rv1337	Rv1333, mec, cysO, cysM, OMGAALCH_01426, JMLJOKFJ_01423
46	-1	3	<Rv1353c — <Rv1357c	Rv1354c, moeY, Rv1356c, GNEOPJHN_01440
47	46	2	<Rv1354c — <moeY	GNEOPJHN_01440
48	-1	3	<Rv1359 — >JDNMFAPF_01438	Rv1358, IKCINDMN_01448
49	-1	2	<Rv1360 — >JDNMFAPF_01441	LHNAMOLA_01445
50	-1	2	>Rv1371 — >Rv1372	HEHGGNEP_01466
51	-1	2	<echA12 — >PE_PGRS29	ctpD, MJNNMHAH_01571, trxB1
52	-1	7	>Rv1508c — >FHCBBFLD_01592	Rv1505c, Rv1506c, Rv1507c, Rv1507A, KFIAJLAO_01591, IGHOFKFC_01593, LOCOBLCN_01601, OMGAALCH_01607
53	-1	5	>fadD25 — <papA4	JDNMFAPF_01611, Rv1523, Rv1524, wbbL2, Rv1526c, pks5, mmpL12, CGLLKJDI_01630, FHCBBFLD_01614, FHCBBFLD_01617
54	-1	2	>Rv1543 — <JDNMFAPF_01634	Rv1544, CINBEEAE_01639
55	-1	2	>Rv1556 — >mmpL6	FHCBBFLD_01647
56	-1	2	>hisB — >impA	hisH, hisA, NEHIPPBO_01692
57	-1	8	>pks10 — >Rv1669	pks7, pks8, pks17, pks9, pks11, KNAEHNCF_01998, LGMPIKFB_01764, LLHMKPOJ_01756, KIOFIBPM_01734, KIOFIBPM_01735, AAEONJPP_01748
58	-1	3	<Rv1676 — <BENKGBHG_01759	MGLKCIJG_01766, Rv1673c, Rv1674c, JDNMFAPF_01766, cmr
59	-1	2	<Rv1686c — <Rv1687c	NKCCGMCN_01769
60	-1	2	<Rv1729c — <Rv1730c	KLNIHKLE_01836
61	-1	2	<Rv1733c — >JDNMFAPF_01831	LGMPIKFB_01837
62	-1	2	<Rv1776c — >cyp144	ADOPOEMM_01877
63	-1	3	>Rv1786 — >JDNMFAPF_01890	PPE25, PE18, PPE26
64	-1	2	>Rv1804c — <PPE29	PPE30, JDNMFAPF_01904, KKNCNKKP_01920, PBBKIKIG_01899
65	-1	2	<Rv1873 — <OMGAALCH_01983	Rv1868, Rv1869c, Rv1870c, Rv1871c, lldD2
66	-1	2	>Rv1877 — <cyp140	JDNMFAPF_01978, Rv1879, FJJIMCNO_01960
67	-1	2	<Rv1903 — >IFJGPHMJ_01993	IHFHHPEG_01984
68	-1	3	<mpt63 — <Rv1929c	Rv1927, Rv1928c, EADOGLGB_02025
69	70	2	>yrbE3B — >Rv1972	mce3A, mce3B, JDNMFAPF_02076, mce3D, lprM, mce3F, HOIGPPMO_02086
70	-1	7	>mpt64 — <JDNMFAPF_02071	yrbE3A, yrbE3B, mce3A, mce3B, JDNMFAPF_02076, mce3D, lprM, mce3F, Rv1972, Rv1973, Rv1974, Rv1975, Rv1976c, Rv1977, Rv1978, Rv1979c, NLCEDGFK_02091, FHCBBFLD_02085, NLCEDGFK_02094, NLCEDGFK_02095, NLCEDGFK_02096, NLCEDGFK_02097, PCALDHCK_01865, PCALDHCK_01863, KIOFIBPM_02056, ACEBFNMG_02061, HOIGPPMO_02086
71	-1	3	>Rv1989c — >JDNMFAPF_02092	PE_PGRS35, cfp21, RV1984a, Rv1985c, Rv1986, Rv1987, erm(37), DHBGKOFE_02084
72	-1	2	<Rv1996 — >mazE6	ctpG, Rv1993c, cmtR, Rv1995
73	-1	4	<Rv2019 — <JDNMFAPF_02131	Rv2017, Rv2018, MNLBCMAJ_02137, KKNCNKKP_02163
74	-1	2	>Rv2024c — >LGMPIKFB_02140	LGMPIKFB_02141, LGMPIKFB_02142
75	-1	2	<Rv2047c — <Rv2049c	pks12, NLCEDGFK_02185
76	-1	3	<rpmB2 — >GCBMOOMO_02219	Rv2059, PLIIDEON_02174, cobN, mazE7, mazF7, cobG, PEKPAJDG_02184, CLGFADNM_02174
77	-1	2	>blaC — <GCBMOOMO_02219	Rv2067c
78	-1	2	<cobL — <Rv2075c	Rv2073c, Rv2074
79	-1	5	<Rv2081c — >Rv2083	Rv2082, HPNGCBKO_02224, DDHKONGI_02206, LOCOBLCN_02217, KIOFIBPM_02170
80	-1	2	<dop — >Rv2113	KHJFADPN_02230
81	-1	2	<Rv2125 — >hisE	DICKHMJL_02224, metH, NLCEDGFK_02262
82	-1	2	<Rv2205c — >Rv2206	HLEAIKOB_02339
83	-1	2	>Rv2264c — >LGMPIKFB_02390	Rv2263
84	-1	2	>lppN — >JDNMFAPF_02405	Rv2271, Rv2272, Rv2273, mazF8, Rv2275, cyp121, Rv2277c
85	-1	2	<Rv2282c — <OPNNEIGF_02401	OMGAALCH_02420
86	134	2	>Rv2308 — >Rv2308a	KFIAJLAO_02420
87	-1	2	>Rv2313c — <JDNMFAPF_02440	Rv2310, JDNMFAPF_02442, Rv2312, JKACJLPI_02434
88	-1	2	>uspC — <Rv2319c	NLCEDGFK_02469
89	-1	2	>Rv2327 — >PE23	BMFNNOFM_02462
90	-1	2	<Rv2337c — <moeW	DFOHMENE_02491
91	-1	2	<sirA — >JDNMFAPF_02525	FJJIMCNO_02523
92	-1	3	<Rv2435c — >rbsK	BENKGBHG_02573, DIIMFKHA_02565
93	-1	3	<Rv2477c — >echA14	HLEAIKOB_02618, Rv2481c, plsB2, plsC, Rv2484c, lipQ, OMGAALCH_02626
94	-1	2	>fadD9 — <ruvB	PE_PGRS44
95	-1	2	>Rv2622 — >Rv2628	TB31.7, Rv2624c, Rv2625c, hrp1, Rv2627c
96	-1	2	>Rv2660c — <DDHKONGI_02786	Rv2645, Rv2646, Rv2647, LGMPIKFB_02787, Rv2650c, Rv2651c, Rv2652c, Rv2653c, Rv2654c, Rv2655c, Rv2656c, Rv2657c, JDNMFAPF_02803, Rv2659c
97	-1	2	>sigA — <Rv2705c	Rv2704
98	-1	2	>Rv2765 — <IFEIDBNN_02941	Rv2766c, LEGLLPEO_02899, GFONBKFK_02901
99	-1	2	<Rv2776c — <Rv2777c	KFIAJLAO_02904
100	-1	2	>Rv2806 — >Rv2807	BGIKMPLF_02941
101	-1	2	<Rv2809 — <GNEOPJHN_02951	Rv2808, OIHMHPFF_02947
102	-1	2	>Rv2884 — <Rv2886c	Rv2885c, GLPAJMGA_02793
103	-1	2	>Rv2891 — >Rv2893	PPE45, JDNMFAPF_03036
104	-1	3	<amt — <ftsY	OPNNEIGF_03061, PCALDHCK_02846
105	-1	2	<serB2 — >fecB	ctaD, PCALDHCK_00959, PCALDHCK_00960, PCALDHCK_00961
106	-1	2	<virS — >adhD	Rv3083, lipR, Rv3085
107	-1	2	>Rv3120 — <KIOFIBPM_03232	cyp141, DDEJOHKL_03274
108	-1	2	>Rv3123 — >moaR1	ENBAIAIJ_03287
109	-1	2	>Rv3126c — >PPE49	INJKFHOB_03264
110	-1	2	<Rv3134c — >PPE51	PPE50
111	-1	2	>fadB4 — >Rv3143	Rv3142c
112	-1	2	>Rv3160c — >PPE53	EADOGLGB_03306
113	-1	2	>Rv3175 — <mesT	HLEAIKOB_03342
114	-1	2	>Rv3180c — <Rv3178a	Rv3179, LGMPIKFB_03330
115	-1	5	>Rv3401 — <Rv3402c	LHDPFGCD_03603, MNLBCMAJ_03599, IPLMBKBA_03576, DHBGKOFE_03549
116	-1	7	<alr — >LEGLLPEO_03613	Rv3424c, PPE57, IPLMBKBA_03600, JDNMFAPF_03608, PPE58, JDNMFAPF_03610, Rv3427c, Rv3428c, JDNMFAPF_03613, KLNIHKLE_03642, KHJFADPN_03613, KHJFADPN_03614, NLCEDGFK_03629
117	116	2	>Rv3428c — <JDNMFAPF_03610	Rv3427c
118	-1	2	<Rv3446c — >eccD4	eccC4
119	-1	2	>Rv3484 — >Rv3488	Rv3485c, DDHKONGI_03656, JDNMFAPF_03672, GNEOPJHN_03664
120	-1	2	>cyp142 — >fadD19	JDNMFAPF_03702, Rv3517, LOCOBLCN_03707
121	-1	2	<Rv3575c — >lppH	KFIAJLAO_03751
122	-1	3	<ftsH — <Rv3612c	PNGPGAFA_03797, HDPAIDDL_03837
123	-1	2	>Rv3635 — <Rv3639c	JDNMFAPF_03820, JDNMFAPF_03821, Rv3638
124	-1	2	<Rv3649 — >JDNMFAPF_03830	Rv3647c, cspA, PLIIDEON_03821
125	-1	2	>Rv3680 — <KHJFADPN_03863	CODOGDPD_03875
126	-1	2	>Rv3737 — <JDNMFAPF_03930	FHCBBFLD_03903
127	-1	2	<proX — >JDNMFAPF_03952	HHCHFEND_03942
128	-1	2	<Rv3762c — <JDNMFAPF_03956	lpqH
129	-1	2	<papA1 — >fadD23	pks2, FNJAKGML_04011
130	-1	2	>pheA — <DFOHMENE_04046	JDNMFAPF_04034, Rv3837c
131	-1	3	<mycP2 — <espG2	eccD2, Rv3888c, MGLKCIJG_04085, GFONBKFK_04083
132	-1	2	>Rv3901c — >HLEAIKOB_04093	DHBGKOFE_04066, DHBGKOFE_04067
133	-1	2	<Rv0063a — <celA1	Rv0063
134	-1	3	<Rv2307B — >JDNMFAPF_02436	KNAEHNCF_01323, Rv2308, Rv2308a, KFIAJLAO_02420
135	-1	2	<secE2 — >JDNMFAPF_00397	Rv0376c, Rv0377, JDNMFAPF_00400
136	-1	3	>PE_PGRS16 — >JDNMFAPF_01036	PE_PGRS17, Rv0979c, rpmF, PE_PGRS18, ADOPOEMM_01037
137	35	2	<PE_PGRS19 — >JDNMFAPF_01132	PE_PGRS20
138	-1	2	<PE_PGRS27 — >KIOFIBPM_01535	Rv1451, MJJKHKCB_01555, PE_PGRS28
139	-1	2	>moaD1 — >EKAIEKEP_03314	LEGLLPEO_03263
140	-1	2	>PE33 — >NLCEDGFK_03858	Rv3651, FHCBBFLD_03809
141	-1	2	>JDNMFAPF_00899 — >JDNMFAPF_00903	Rv0849, JDNMFAPF_00901, Rv0851c
142	35	2	>JDNMFAPF_01137 — <JDNMFAPF_01139	fadA3
143	-1	2	>JDNMFAPF_01609 — <PCALDHCK_01400	Rv1519, Rv1520
144	-1	2	>JDNMFAPF_01701 — <HLEAIKOB_01704	trpA, lgt, AGGAOBHI_01695
145	-1	2	<JDNMFAPF_02131 — <MDBLJKGJ_02131	NLCEDGFK_02146
146	-1	5	<JDNMFAPF_02683 — <GNEOPJHN_02679	lppA, lppB, NLCEDGFK_02704
147	-1	9	<NKCCGMCN_00301 — >KIOFIBPM_00297	Rv0278c, PE_PGRS4, IKIEJDED_00297, BAIOKFIE_00299, DHBGKOFE_00305, APKBMGCI_00295
148	-1	2	<KKNCNKKP_02730 — >HLEAIKOB_02710	GNEOPJHN_02700