The pangene GFA viewer is available at this link. The server is open sourced at GitHub and the underlying pangene graph is publicly available via Zenodo. You are free to deploy your own instance. The server does not log your IP address or other personal information anyway.
The table below shows a few examples of human genes with known copy number changes. This page gives all variations among 100 human haplotypes and this page shows all local gene-level variations among 152 Mtb genomes.
| Gene | Description |
|---|---|
| Amylase | Amylase, salivary [OMIM:104700] |
| ARHGEF35 | Rho guanine nucleotide exchange factor 35 [NCBI:445328] |
| C4 | Complement component 4 [OMIM:120810] |
| CCL3L1 | Chemokine, CC motif, ligand 3-like 1 [OMIM:601395] |
| CFHR1 | Complement factor H-related 1 [OMIM:134371] |
| CYP2A6 | Cytochrome P450, subfamily IIA, polypeptide 6 [OMIM:122720] |
| CYP2D6 | Cytochrome P450, subfamily IID, polypeptide 6 [OMIM:124030] |
| GPRIN2 | GRIN family, number 2 [OMIM:611240] |
| GTF2I | General transcription factor II-I [OMIM:601679] |
| HPR | Haptoglobin-related protein [OMIM:140210] |
| MAPT | Microtuble-associated protein tau [OMIM:157140] |
| MRGPRX1 | MAS-related G protein-coupled receptor family, member X1 [OMIM:607227] |
| NBPF1 | Neuroblostoma breakpoint family, member 1 [OMIM:610501] |
| PDPR | Pyruvate dehydrogenase phosphatase regulatory subunit [OMIM:617835] |
| ORM1 | Orosomucoid 1 [OMIM:138600] |
| RHD | Rhesus (Rh) blood group, D antigen [OMIM:111680] |
| SMN2 | Survival of motor neuron 2 [OMIM:601627] |
| HLA-DRB1 | MHC, Class II, DR Beta-1 [OMIM:142857] |
| KIR | Killer cell Ig-like receptor |