Pangene Viewer

The pangene GFA viewer is available at this link. The server is open sourced at GitHub and the underlying pangene graph is publicly available via Zenodo. You are free to deploy your own instance. The server does not log your IP address or other personal information anyway.

The table below shows a few examples of human genes with known copy number changes. This page gives all variations among 100 human haplotypes and this page shows all local gene-level variations among 152 Mtb genomes.

Amylase Amylase, salivary [OMIM:104700]
ARHGEF35 Rho guanine nucleotide exchange factor 35 [NCBI:445328]
C4 Complement component 4 [OMIM:120810]
CCL3L1 Chemokine, CC motif, ligand 3-like 1 [OMIM:601395]
CFHR1 Complement factor H-related 1 [OMIM:134371]
CYP2A6 Cytochrome P450, subfamily IIA, polypeptide 6 [OMIM:122720]
CYP2D6 Cytochrome P450, subfamily IID, polypeptide 6 [OMIM:124030]
GPRIN2 GRIN family, number 2 [OMIM:611240]
GTF2I General transcription factor II-I [OMIM:601679]
HPR Haptoglobin-related protein [OMIM:140210]
MAPT Microtuble-associated protein tau [OMIM:157140]
MRGPRX1 MAS-related G protein-coupled receptor family, member X1 [OMIM:607227]
NBPF1 Neuroblostoma breakpoint family, member 1 [OMIM:610501]
PDPR Pyruvate dehydrogenase phosphatase regulatory subunit [OMIM:617835]
ORM1 Orosomucoid 1 [OMIM:138600]
RHD Rhesus (Rh) blood group, D antigen [OMIM:111680]
SMN2 Survival of motor neuron 2 [OMIM:601627]
HLA-DRB1 MHC, Class II, DR Beta-1 [OMIM:142857]
KIR Killer cell Ig-like receptor